Sunghee Oh* and Seongho Song. Differential gene expression (DEX) and alternative splicing events (ASE) for temporal dynamic processes using HMMs and hierarchical bayesian modeling approaches. Invited Springer Book Chapter (In Press) (2015)
Oh* S, Song S, Dasguta N, and Grabowski GA. (2014) The landscape of static and temporal dynamics in transcriptome data. Front Genet.
Oh* S, Song S,Grabowski G, Zhao H, and Noonan JP. (2013) Time series expression analyses using mRNA-seq: A statistical approach. Journal of Biomed Research International.
Sunghee Oh*, Dongwan Kang, Guy N Brock, and George C. Tseng. (2011) Biological impacts of missing value imputation on down-stream analyses in microarray data. Bioinformatics 27:78-86
Sunghee Oh*, George C. Tseng, and Etienne Sibille. (2011) Reciprocal Phylogenetic Conservation of Molecular Aging in Mouse and Human Brain. Neurobiology of Aging 32:1331-5.
Sunghee Oh* (2015) How are Bayesian and non-parametric methods doing a great job in RNA-seq expression profile? Communications for Applications and Methods
Albert E. Ayoub, Sunghee Oh*, Yanhua Xie, Jing Leng, Justin Cotney, Martin H. Dominguez, James P. Noonan and Pasko Rakic. (2011) Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high- resolution mRNA-sequencing. Proc. Natl. Acad.Sci. 108:14950-5
Cotney J, Leng J, Oh* S, Demare LE, Adinolfi H, Gestein MB, Noonan JP. (2012) Department of Genetics, Yale School of Medicine, Genome-wide transitions in chromatin state and enhancer activation characterize mammalian limb development. Genome Research. 22(6):1069-80.
Etienne Sibille, Yingjie Wang, Jennifer Joeyen-Waldorf, Chris Gaiteri, Alexandre Surget, Sunghee Oh*, Catherine Belzung, George C Tseng, and David A Lewis. (2009) A Phylogenetically-Conserved Molecular Signature of Depression in the Amygdala. American Journal of Psychiatry 166:1011-24.
Glorioso, C., Oh, S*., Douillard, G., Sibille, E. (2011) Brain molecular aging, promotion of neurological disease and modulation by Sirtuin5 longevity gene polymorphism. Neurobiology of disease 41:279-90.
Alfred Guirguis, Esther Elishaev, Sunghee Oh*, George C. Tseng, Kristin Zorn, Julie A. DeLoia. (2008) Use of Gene Expression Profiles to Stage Concurrent Endometrioid Tumors for the Endometrium and Ovary. Gynecologic Oncology 108:370-376.
Bandyopadhyay U, Cotney J, Nagy M, Oh* S, Leng J, Mahajan M, Mane S, Fenton WA, Noonan JP, Horwich AL. (2013) RNA-seq profiling of spinal cord motor neurons from a presymptomatic SOD1 ALS mouse. PLoS One. 8(1) e53575
Dasgupta N, Xu You-Hai, Oh* S, Sun Y, Li J, Keddache M, Grabowski GA. (2013) Gaucher Disease: Transcriptome analyses using Microarray and mRNA Sequencing in a Gba1 Mutant Mouse Model Treated with Velaglucerase alfa or Imiglucerase. PLoS One. 8(10) e74912
Hong Ji, Xue Zhang, Sunghee Oh*, Ashley Ulm, Christopher Mayhew, Mark Erickson, James Wells, and Gurjit K. Khurana Hershey. (2014) Dynamic transcriptional and epigenomic reprogramming from nasal epithelial cells to induced pluripotent stem cells. J Allergy Clin Immunol.
Xue Zhang, Ashley Ulm, Hari K. Somineni, Sunghee Oh*, Maria Lehn, Matthew Wirauch, Hongxuan, Edith Janssen, and Hong Ji. (2014) Aug 20;7:21 DNA methylation dynamics during ex vivo differentiation and maturation of dendritic cell. Epigenetics Chromatin